Hi Jonathan,
Take a look at Jason Swails' wiki on this:
http://jswails.wikidot.com/mac-os-x
I followed this and it worked great for me on OSX 10.8.
All the best
Ross
On 9/18/12 7:15 PM, "Jonathan Gough" <jonathan.d.gough.gmail.com> wrote:
>Just received my university issues mac and am trying to install amber
>(10.8.1, macports 2.1.2, Xcode 4.4.1). Apparently mountain lion doesn't
>have x11,
>
>http://support.apple.com/kb/HT5293
>
>therefore I had to install it using
>
>http://xquartz.macosforge.org/landing/
>
>Then I got the error saying that clang is not installed:
>
>ranlib libsqm.a
>mv libsqm.a /Users/jonathangough/amber12/lib
>gfortran -DBINTRAJ -c -O0 -ffree-form -I../../AmberTools/src/pbsa
>-I../../AmberTools/src/sqm -I../../AmberTools/src/rism -I../../include
> -I/Users/jonathangough/amber12/include
>-I/Users/jonathangough/amber12/include -o file_io_dat.o file_io_dat.F90
>/opt/local/bin/as: assembler (/opt/local/bin/clang) not installed
>make[2]: *** [file_io_dat.o] Error 1
>make[1]: *** [serial] Error 2
>make: *** [install] Error 2
>
>however - clang is present at /usr/bin/clang
>and is in my path.
>
>Jonathans-MacBook-Air:amber12 jonathangough$ whereis clang
>/usr/bin/clang
>Jonathans-MacBook-Air:amber12 jonathangough$ clang
>clang: error: no input files
>Jonathans-MacBook-Air:amber12 jonathangough$
>
>
>/opt/local bin has:
>
>and Jonathans-MacBook-Air:bin jonathangough$ pwd
>/opt/local/bin
>Jonathans-MacBook-Air:bin jonathangough$ ls clang*
>clang++-mp-2.9 clang-mp-2.9
>
>It's not a must have install on the laptop, but it would be nice.
>
>I didn't find this in either of the mail lists, so ....
>
>any thoughts, insight?
>
>Best,
>Jonathan
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Received on Tue Sep 18 2012 - 20:00:02 PDT
