It looks like there is an issue with your CUDA installation. What
operating system are you using and What do the following commands return?
1) nvcc -V
2) cat /proc/driver/nvidia/version
3) echo $CUDA_HOME
4) echo $AMBERHOME
5) echo $LD_LIBRARY_PATH
All the best
Ross
On 9/18/12 7:00 PM, "bmartini" <bmartini.ibt.unam.mx> wrote:
> Dear Amber Developers:
> I am trying to install amber12 on GPU´s
>
> I followed the instruction in AmberTools12.pdf, like:
> ./configure -cuda gnu
> make install
>
> However, I got the following error message:
>
> ./cuda/cuda.a -L/usr/local/cuda//lib64 -L/usr/local/cuda//lib -lcurand
> -lcufft -lcudart -L/home/ilizaliturri/amber_package-12/amber12/lib
> -L/home/ilizaliturri/amber_package-12/amber12/lib -lnetcdf
> /usr/bin/ld: ./cuda/cuda.a(kNLRadixSort.o): undefined reference to
> symbol '__cxa_pure_virtual..CXXABI_1.3'
> /usr/bin/ld: note: '__cxa_pure_virtual..CXXABI_1.3' is defined in DSO
> /usr/lib64/libstdc++.so.6 so try adding it to the linker command line
> /usr/lib64/libstdc++.so.6: could not read symbols: Invalid operation
> collect2: ld devolvió el estado de salida 1
> make[3]: *** [pmemd.cuda] Error 1
> make[3]: se sale del directorio
> `/home/ilizaliturri/amber_package-12/amber12/src/pmemd/src'
> make[2]: *** [cuda] Error 2
> make[2]: se sale del directorio
> `/home/ilizaliturri/amber_package-12/amber12/src/pmemd'
> make[1]: *** [cuda] Error 2
> make[1]: se sale del directorio
> `/home/ilizaliturri/amber_package-12/amber12/src'
> make: *** [install] Error 2
> [root.localhost amber12]#
>
> can anyone tell what is the problem and how to solve it.
>
>
>
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Received on Tue Sep 18 2012 - 19:30:03 PDT
