Dear Amber Developers:
I am trying to install amber12 on GPU´s
I followed the instruction in AmberTools12.pdf, like:
./configure -cuda gnu
make install
However, I got the following error message:
./cuda/cuda.a -L/usr/local/cuda//lib64 -L/usr/local/cuda//lib -lcurand
-lcufft -lcudart -L/home/ilizaliturri/amber_package-12/amber12/lib
-L/home/ilizaliturri/amber_package-12/amber12/lib -lnetcdf
/usr/bin/ld: ./cuda/cuda.a(kNLRadixSort.o): undefined reference to
symbol '__cxa_pure_virtual..CXXABI_1.3'
/usr/bin/ld: note: '__cxa_pure_virtual..CXXABI_1.3' is defined in DSO
/usr/lib64/libstdc++.so.6 so try adding it to the linker command line
/usr/lib64/libstdc++.so.6: could not read symbols: Invalid operation
collect2: ld devolvió el estado de salida 1
make[3]: *** [pmemd.cuda] Error 1
make[3]: se sale del directorio
`/home/ilizaliturri/amber_package-12/amber12/src/pmemd/src'
make[2]: *** [cuda] Error 2
make[2]: se sale del directorio
`/home/ilizaliturri/amber_package-12/amber12/src/pmemd'
make[1]: *** [cuda] Error 2
make[1]: se sale del directorio
`/home/ilizaliturri/amber_package-12/amber12/src'
make: *** [install] Error 2
[root.localhost amber12]#
can anyone tell what is the problem and how to solve it.
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Received on Tue Sep 18 2012 - 19:30:02 PDT
