Re: [AMBER] Amber12 Configuring NetCDF or fftw3 or MTK++ hang

From: Yu Chen <chenyu.umbc.edu>
Date: Thu, 30 Aug 2012 11:19:17 -0400

Thanks, Jason and Ben

For gcc, it's 64-bit.
For checking process, I will check when I can access the computer, right
now, it's on the go.

Regards,
Chen

On Wed, Aug 29, 2012 at 6:54 PM, Ben Roberts <ben.roberts.geek.nz> wrote:

> Hi Chen,
>
> Do you see any hint of what process is hanging (e.g., by monitoring your
> system using "top")?
>
> Cheers,
> Ben
>
> Sent from my iPhone
>
> On 30/08/2012, at 8:26 AM, Yu Chen <chen.hhmi.umbc.edu> wrote:
>
> > Hello,
> >
> > I am trying to configuring Amber12 on Macbook Pro with OS X 10.7.4 with
> > lastest Xcode 4.4.1 with GNU compilers installed/managed from FINK (gcc
> > 4.7.1)
> >
> > It will hang at either
> > Configuring NetCDF (may be time-consuming)... with "./configure gnu"
> > or
> > Configuring fftw3 (may be time-consuming)... with "./configure
> > -nobintraj gnu"
> > or
> > Configuring MTK++ (may be time-consuming)... with "./configure
> > -nobintraj -nofftw3 gnu"
> >
> > Believe me, we noticed "(may be time-consuming)..." warning. We waited
> for
> > more than 3 hours before we quit.
> >
> > Although on an other Macbook Pro with 10.7.4 with Xcode 4.3.2 with GNU
> from
> > Macports (gcc 4.3.4), everything configured/compiled/tested all fine. And
> > the NetCDF/fftw3/MTK++ configuration parts all went pass fairly quickly
> > (only couple of minutes).
> >
> > There are no errors/warning or any outputs, the "netcdf_config.log" file
> is
> > empty, although the timestamp of the file did get updated.
> >
> > Can anybody give some advices on what's going on and how to proceed?
> >
> > Thanks in advance for your time and help!
> >
> > Regards,
> > Chen
> > _______________________________________________
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> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Thu Aug 30 2012 - 08:30:02 PDT
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