Re: [AMBER] Amber12 Configuring NetCDF or fftw3 or MTK++ hang

From: Ben Roberts <ben.roberts.geek.nz>
Date: Thu, 30 Aug 2012 10:54:50 +1200

Hi Chen,

Do you see any hint of what process is hanging (e.g., by monitoring your system using "top")?

Cheers,
Ben

Sent from my iPhone

On 30/08/2012, at 8:26 AM, Yu Chen <chen.hhmi.umbc.edu> wrote:

> Hello,
>
> I am trying to configuring Amber12 on Macbook Pro with OS X 10.7.4 with
> lastest Xcode 4.4.1 with GNU compilers installed/managed from FINK (gcc
> 4.7.1)
>
> It will hang at either
> Configuring NetCDF (may be time-consuming)... with "./configure gnu"
> or
> Configuring fftw3 (may be time-consuming)... with "./configure
> -nobintraj gnu"
> or
> Configuring MTK++ (may be time-consuming)... with "./configure
> -nobintraj -nofftw3 gnu"
>
> Believe me, we noticed "(may be time-consuming)..." warning. We waited for
> more than 3 hours before we quit.
>
> Although on an other Macbook Pro with 10.7.4 with Xcode 4.3.2 with GNU from
> Macports (gcc 4.3.4), everything configured/compiled/tested all fine. And
> the NetCDF/fftw3/MTK++ configuration parts all went pass fairly quickly
> (only couple of minutes).
>
> There are no errors/warning or any outputs, the "netcdf_config.log" file is
> empty, although the timestamp of the file did get updated.
>
> Can anybody give some advices on what's going on and how to proceed?
>
> Thanks in advance for your time and help!
>
> Regards,
> Chen
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber





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Received on Wed Aug 29 2012 - 16:00:05 PDT
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