Hi,
> WARNING: Local coordinate 34 differs from partner coordinate
> 34 !
> SANDER BOMB in subroutine sc_check_and_adjust
> Atom coordinate disagreement
> Check input files.
>
> I know that this error occurs when the coordinates of two crd files are
> different significantly,
> but I checked several times and am quite sure that there is no
> difference between two crd files except the coordinate of disappearing
> atom.
It is quite unlikely that the code calculates the difference wrong. Make
sure you checked the actual files you feed to sander. Coordinate 34 (i.e.
the x-coordinate of the 12th) atom is different.
Thomas
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Received on Sat Jul 21 2012 - 10:30:02 PDT
