[AMBER] Constraint simulations

From: Rajendra Sharma <rajenbiotech.gmail.com>
Date: Wed, 4 Jul 2012 12:51:24 +0530

Dear All,

I need to do some simulations on domain A of a protein where I have to
constraint the ends(C and N terminal both). N terminal is attached to
a membrane by a linker region while C terminal is attached to second domain
of the same protein. Can some one suggest how much value of harmonic
potential I should use to constraint the ends or some publications to read.

Sincerely,

Rajendras

-- 
Rajendra Sharma
Junior Research Fellow,
Computational Biophysics,
*National Center for Biological Sciences,*
(Tata institute of Fundamental Research)
India.
Mobile No. +91-9950675288
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Received on Wed Jul 04 2012 - 00:30:02 PDT