> i did the hb analysis ptraj,there's an output file which shows the
> occupance and lifetime. i attached the file of name hbond.ptraj input file
> and output, anal_hbond.out.
The AMBER reflector archive has some posts discussing this...
> i dont know how could get understood result? what is exactly
> does lifetiime mean? the average time of a hb between
> frames?the frame here means the frame we used for the ptraj
> analysis? another question i dont get is the time interval we
> set . the hb command line ,what does this time interval mean?
time is the interval between frames loaded up by ptraj, defaults to 1 ps.
lifetime is the average time the hbond is active. Note that this will
depend on the choice of hbond distance (i.e. hbond cutoff).
--tec3
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Received on Mon Jun 04 2012 - 12:30:02 PDT
