[AMBER] ptraj Hbond analysis

From: shradhey gupta <shradhey.iitk.ac.in>
Date: Fri, 1 Jun 2012 10:26:20 +0530

dear all amber users,

i did the hb analysis ptraj,there's an output file which shows the
occupance and lifetime. i attached the file of name hbond.ptraj input file
and output, anal_hbond.out.
           i dont know how could get understood result? what is exactly
does lifetiime mean? the average time of a hb between
frames?the frame here means the frame we used for the ptraj
analysis? another question i dont get is the time interval we
set . the hb command line ,what does this time interval mean?

Thanks for the concern.

Shradhey Gupta
Research scholar
C/O Prof. Pratik Sen
Department of Chemistry,
Indian Institute Of Technology,KANPUR

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber

Received on Thu May 31 2012 - 22:00:03 PDT
Custom Search