Hello,
So I have fixed these errors, but it exposes new ones:
bintraj.F90:582.18:
call checkerror(nf90_put_var(ncid, var_id, buf(:,:), &
1
Error: Generic function 'nf90_put_var' at (1) is not consistent with a
specific intrinsic interface
bintraj.F90:474.18:
call checkerror(nf90_put_var(mdcrd_ncid, coord_var_id, buf(:,:), &
1
Error: Generic function 'nf90_put_var' at (1) is not consistent with a
specific intrinsic interface
make[3]: *** [bintraj.o] Error 1
make[3]: *** Waiting for unfinished jobs....
make[2]: *** [serial] Error 2
make[1]: *** [serial] Error 2
make: *** [install] Error 2
This occurs in the pmemd source code. The equivalent code in sander
behaves just fine (although the syntax is different), so I'm not sure why
this is choking...
As a side note, if you have an Apple developer account, you can go here:
https://developer.apple.com/downloads/index.action and download an older
version of Xcode tools and avoid these issues.
I'll try to keep looking into the above as I can.
HTH,
Jason
On Sun, May 20, 2012 at 7:12 PM, Arthur Roberts <audie.uga.edu> wrote:
> Hi, all.
>
> Thanks for the info. I appreciate your help. However, I still get the
> following errors, when I try to install on Lion Mac OSX:
>
> bintraj.f90:558.18:
>
> call checkerror(nf90_put_var(ncid, var_id, buf(:,:), &
> 1
> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.f90:450.18:
>
> call checkerror(nf90_put_var(mdcrd_ncid, coord_var_id, buf(:,:), &
> 1
> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.f90:220.22:
>
> call checkerror(nf90_put_att(mdcrd_ncid, mdcrd_veloc_var_id, &
> 1
> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.f90:316.20:
>
> call checkerror(nf90_put_att(mdvel_ncid, mdvel_veloc_var_id, &
> 1
> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
> specific intrinsic interface
> make[2]: *** [bintraj.o] Error 1
> make[1]: *** [install] Error 2
> make: *** [serial] Error 2
>
> Much appreciated,
> Audie
>
>
> On 5/20/12 7:52 AM, case wrote:
> > On Sat, May 19, 2012, Arthur Roberts wrote:
> >> However, I get the following error:
> >>
> >> gfortran -c -O3 -mtune=generic -ffree-form -o mbar.o _mbar.f
> >> cpp -traditional -P -DBINTRAJ bintraj.f> _bintraj.f
> >> gfortran -c -O3 -mtune=generic -ffree-form -o bintraj.o _bintraj.f
> >> _bintraj.f:403.25:
> >>
> >> call checkerror(nf90_put_att(vel_ncid, VelocVarID,
> >> "scale_factor",&
> >> 1
> >> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
> >> specific intrinsic interface
> > There have been two separate reports about this on Lion. The full line
> > in bintraj.F90 is
> >
> > call checkNCerror(nf90_put_att(vel_ncid, VelocVarID, "scale_factor",&
> > 20.455), "define velocity scale_factor")
> >
> > I don't have Lion myself, but suggest putting quotes around "20.455" to
> see
> > if that helps. (Lack of quotes seems to be the distinguishing feature
> of this
> > call to nf90_put_att compared to all the others.
> >
> > (Similar instructions for earlier versions of Amber.)
> >
> > Of course, this will have to be tested for functionality as well.
> >
> > ....dac
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> >
>
>
> --
> Dr. Arthur "Audie" Roberts, Ph.D.
> University of Georgia
> Department of Pharmaceutical and Biomedical Sciences
> 250 W. Green St.
> Pharmacy South, Room 424
> Athens, GA 30602
> email: audie.uga.edu
> alt: aroberts99163.yahoo.com
> office: 706-542-7787
> lab: 706-542-5979
> fax: 706-542-5358
> cell: 206-850-7468
> skype=aroberts92122
> For urgent matters, text me at 206-850-7468.
>
>
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu May 31 2012 - 13:30:03 PDT
