As a side note, it was just Dave's suggestion.
On Thu, May 31, 2012 at 4:01 PM, Jason Swails <jason.swails.gmail.com>wrote:
> Hello,
>
> So I have fixed these errors, but it exposes new ones:
>
> bintraj.F90:582.18:
>
> call checkerror(nf90_put_var(ncid, var_id, buf(:,:), &
> 1
> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
> specific intrinsic interface
> bintraj.F90:474.18:
>
> call checkerror(nf90_put_var(mdcrd_ncid, coord_var_id, buf(:,:), &
> 1
> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
> specific intrinsic interface
> make[3]: *** [bintraj.o] Error 1
> make[3]: *** Waiting for unfinished jobs....
> make[2]: *** [serial] Error 2
> make[1]: *** [serial] Error 2
> make: *** [install] Error 2
>
> This occurs in the pmemd source code. The equivalent code in sander
> behaves just fine (although the syntax is different), so I'm not sure why
> this is choking...
>
> As a side note, if you have an Apple developer account, you can go here:
> https://developer.apple.com/downloads/index.action and download an older
> version of Xcode tools and avoid these issues.
>
> I'll try to keep looking into the above as I can.
>
> HTH,
> Jason
>
> On Sun, May 20, 2012 at 7:12 PM, Arthur Roberts <audie.uga.edu> wrote:
>
>> Hi, all.
>>
>> Thanks for the info. I appreciate your help. However, I still get the
>> following errors, when I try to install on Lion Mac OSX:
>>
>> bintraj.f90:558.18:
>>
>> call checkerror(nf90_put_var(ncid, var_id, buf(:,:), &
>> 1
>> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
>> specific intrinsic interface
>> bintraj.f90:450.18:
>>
>> call checkerror(nf90_put_var(mdcrd_ncid, coord_var_id, buf(:,:), &
>> 1
>> Error: Generic function 'nf90_put_var' at (1) is not consistent with a
>> specific intrinsic interface
>> bintraj.f90:220.22:
>>
>> call checkerror(nf90_put_att(mdcrd_ncid, mdcrd_veloc_var_id, &
>> 1
>> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
>> specific intrinsic interface
>> bintraj.f90:316.20:
>>
>> call checkerror(nf90_put_att(mdvel_ncid, mdvel_veloc_var_id, &
>> 1
>> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
>> specific intrinsic interface
>> make[2]: *** [bintraj.o] Error 1
>> make[1]: *** [install] Error 2
>> make: *** [serial] Error 2
>>
>> Much appreciated,
>> Audie
>>
>>
>> On 5/20/12 7:52 AM, case wrote:
>> > On Sat, May 19, 2012, Arthur Roberts wrote:
>> >> However, I get the following error:
>> >>
>> >> gfortran -c -O3 -mtune=generic -ffree-form -o mbar.o _mbar.f
>> >> cpp -traditional -P -DBINTRAJ bintraj.f> _bintraj.f
>> >> gfortran -c -O3 -mtune=generic -ffree-form -o bintraj.o _bintraj.f
>> >> _bintraj.f:403.25:
>> >>
>> >> call checkerror(nf90_put_att(vel_ncid, VelocVarID,
>> >> "scale_factor",&
>> >> 1
>> >> Error: Generic function 'nf90_put_att' at (1) is not consistent with a
>> >> specific intrinsic interface
>> > There have been two separate reports about this on Lion. The full line
>> > in bintraj.F90 is
>> >
>> > call checkNCerror(nf90_put_att(vel_ncid, VelocVarID, "scale_factor",&
>> > 20.455), "define velocity scale_factor")
>> >
>> > I don't have Lion myself, but suggest putting quotes around "20.455" to
>> see
>> > if that helps. (Lack of quotes seems to be the distinguishing feature
>> of this
>> > call to nf90_put_att compared to all the others.
>> >
>> > (Similar instructions for earlier versions of Amber.)
>> >
>> > Of course, this will have to be tested for functionality as well.
>> >
>> > ....dac
>> >
>> > _______________________________________________
>> > AMBER mailing list
>> > AMBER.ambermd.org
>> > http://lists.ambermd.org/mailman/listinfo/amber
>> >
>> >
>>
>>
>> --
>> Dr. Arthur "Audie" Roberts, Ph.D.
>> University of Georgia
>> Department of Pharmaceutical and Biomedical Sciences
>> 250 W. Green St.
>> Pharmacy South, Room 424
>> Athens, GA 30602
>> email: audie.uga.edu
>> alt: aroberts99163.yahoo.com
>> office: 706-542-7787
>> lab: 706-542-5979
>> fax: 706-542-5358
>> cell: 206-850-7468
>> skype=aroberts92122
>> For urgent matters, text me at 206-850-7468.
>>
>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu May 31 2012 - 13:30:04 PDT
