Jason,
As far as I know I am using the exact compilers in the example on the wiki:
port select --list gcc
Available versions for gcc:
gcc42
llvm-gcc42
mp-gcc44 (active)
none
I have applied the bugfix to AmberTools as you suggested.
Robert
On Mon, May 14, 2012 at 11:11 AM, Jason Swails <jason.swails.gmail.com>wrote:
> What version of the GNU compilers are you using?
>
> My suggestion is to use the exact compilers used in the example on the wiki
> you were following.
>
> Also, the real8 problem should have been fixed by a bugfix to AmberTools.
> Please check that you have all bugfixes applied. (Since you applied one by
> hand, use the command:
>
> ./patch_amber.py --update --ignore-fails
> )
>
> HTH,
> Jason
>
> On Mon, May 14, 2012 at 8:06 AM, Robert Oswald <robert.oswald.gmail.com
> >wrote:
>
> > I am trying to install AmberTools12 and Amber12 on Mac OS X (10.7.3)
> > following exactly the procedure described in:
> >
> > http://jswails.wikidot.com/installing-amber12-and-ambertools-12
> >
> > I had no problem installing AmberTools12 alone (except for having to fix
> > the real8 problem in psfprm.F90). Installing with Amber 12, I have run
> into
> > the following issue:
> >
> > gfortran -DBINTRAJ -c -O3 -mtune=native -ffree-form
> > -I../../AmberTools/src/pbsa -I../../AmberTools/src/sqm
> > -I../../AmberTools/src/rism -I../../include
> > -I/Users/reo1/Documents/amber12/include
> > -I/Users/reo1/Documents/amber12/include -o bintraj.o bintraj.F90
> > bintraj.F90:119.27:
> >
> > call checkNCerror(nf90_put_att(vel_ncid, VelocVarID,
> > "scale_factor", &
> > 1
> > Error: Generic function 'nf90_put_att' at (1) is not consistent with a
> > specific intrinsic interface
> > make[2]: *** [bintraj.o] Error 1
> > make[1]: *** [serial] Error 2
> > make: *** [install] Error 2
> >
> > I'd be grateful for any help in resolving this problem.
> > Thanks,
> > Robert Oswald
> >
> >
> > --
> > ********************************************
> > Robert Oswald
> > Department of Molecular Medicine
> > Cornell University
> > Ithaca, NY 14850
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
********************************************
Robert Oswald
Department of Molecular Medicine
Cornell University
Ithaca, NY 14850
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Received on Mon May 14 2012 - 08:30:03 PDT
