Hi Albert,
The script was designed for CHARMM-GUI pdb files. It sounds like the gromacs file has atoms that are named differently in POPE (or extra atoms?). Take a look to see which atoms still have the POPE label to see the differences.
Those warnings are normal for loading PDBs with Lipid11 in leap.
Best,
Ben Madej
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Received on Tue May 08 2012 - 13:00:04 PDT
