Dear Agostino
I think that RAMD it is not implemented for Amber11 or 12, moreover I
remember a similar discussion in this list some weeks ago.
http://archive.ambermd.org/201203/0311.html
I have successfully used RAMD in NAMD 2.8 and GPU, using the amber
prmtop file. NAMD 2.7b does not work with prmtop.
Jacopo
2012/4/30 Agostino Bruno <agostino.bruno.nemo.unipr.it>
> Dear All,
>
> I was wondering is it possible to perform RAMD simulations using Amber11 or Amber12, using the GPU
> version of amber or the pmemd.MPI command?
>
> Thank you very much for your attention
>
> best regards,
>
> Agostino
>
> --
> Agostino Bruno, PhD
> Dipartimento Farmceutico
> Universita' degli Studi di Parma
>
>
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--
Jacopo Sgrignani PhD
CNR-IOM-Democritos National Simulation Center
c/o International School for Advanced Studies (SISSA/ISAS)
via Bonomea 265,
34136
Trieste
Italy
email: sgrigna.sissa.it
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Received on Mon Apr 30 2012 - 07:30:04 PDT
