Dear Agostino,
No, it is not possible unless you port the AMBER 8 RAMD patch to AMBER
11 or 12.
Currently, we (me and Rebecca Wade) recommend people to use the RAMD
module distributed with NAMD for these types of simulations.
Before using NAMD with AMBER foirce field, check this page carefully
http://ambermd.org/namd/namd_amber.html
Best,
Vlad
On 04/30/2012 03:54 PM, Agostino Bruno wrote:
> Dear All,
>
> I was wondering is it possible to perform RAMD simulations using Amber11 or Amber12, using the GPU
> version of amber or the pmemd.MPI command?
>
> Thank you very much for your attention
>
> best regards,
>
> Agostino
>
> --
> Agostino Bruno, PhD
> Dipartimento Farmceutico
> Universita' degli Studi di Parma
>
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
>
--
Dr. Vlad Cojocaru
Max Planck Institute for Molecular Biomedicine
Department of Cell and Developmental Biology
Röntgenstrasse 20, 48149 Münster, Germany
Tel: +49-251-70365-324; Fax: +49-251-70365-399
Email: vlad.cojocaru[at]mpi-muenster.mpg.de
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Received on Mon Apr 30 2012 - 07:30:03 PDT
