Re: [AMBER] creating a box of fixed size

From: francesco oteri <>
Date: Thu, 26 Apr 2012 15:34:25 +0200

Hi bala,
I don't know how to do in amber, but you can use the solvate module in vmd
and then using the generated pdb in tleap


Il giorno 26 aprile 2012 11:44, Bala subramanian
<>ha scritto:

> Hi Amber users,
> I want to create a box of 40Ang and then place the protein and water inside
> the box. Is there any way i can do the same in xleap. While i am aware that
> the solvent box can be create with solvateBox command, i am not sure if it
> can create a box of fixed size.
> Do i need to play with the distance parameter in solvateBox command, so as
> to get the box of desired size.
> Thanks,
> Bala
> _______________________________________________
> AMBER mailing list

Cordiali saluti, Dr.Oteri Francesco
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Received on Thu Apr 26 2012 - 07:00:02 PDT
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