Re: [AMBER] why no periodic information?

From: Albert <mailmd2011.gmail.com>
Date: Wed, 18 Apr 2012 21:39:04 +0200

yes, I select this type otherwise VMD don't know what kind of file it is....

On 04/18/2012 09:36 PM, Aron Broom wrote:
> and when you loaded the inpcrd file after first loading the prmtop, did you
> load it as "amber coordinates with periodic box"?
>
> On Wed, Apr 18, 2012 at 3:29 PM, Albert<mailmd2011.gmail.com> wrote:
>
>> Dear:
>> thank you very much for your reply.
>> I do get the information at the bottom of the inprop file :
>>
>>
>> 78.6719840 79.1768040 73.2719700 90.0000000 90.0000000 90.0000000
>>
>> I also tried to open prmtop first in VMD, and then load inprop file into
>> it... what I found is really surprising: there is only one line in the VMD
>> view window. Enclosed this email, you can find a screenshot.....
>>
>> However, I get the atoms number in VMD main window...
>>
>> thank you very much
>>
>>
>>
>>
>> On 04/18/2012 09:21 PM, Aron Broom wrote:
>>
>>> Also, I think you want to open the prmtop first, and then load the inpcrd
>>>
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>>
>


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Received on Wed Apr 18 2012 - 13:00:04 PDT
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