Re: [AMBER] sander error during GB calculations

From: Qiong Zhang <qiong.zhang.qzh.gmail.com>
Date: Mon, 16 Apr 2012 22:15:40 -0400

Hi again, problem resolved when I load intel/12.1.6.233 instead of
intel-compiler/12.1.

Qiong


On Mon, Apr 16, 2012 at 10:09 PM, Qiong Zhang <qiong.zhang.qzh.gmail.com>wrote:

> Hi all,
>
> I came across a problem when doing MMGBSA calculations with per-residue
> decomposition, which requires sander. It works well for MMGBSA without
> decomposition.
>
> Beginning GB calculations with sander...
> calculating complex contribution...
> /lap/amber/11.0.17_AT1.5/bin/sander: symbol lookup error:
> /lap/amber/11.0.17_AT1.5/bin/sander: undefined symbol: __intel_ssse3_memcpy
> Error: sander error during GB calculations!
>
> I think it has something to do with the intel compilers. But I do not know
> how to solve the problem. Could you please give me some suggestions? Thanks!
>
> Regards,
>
> Qiong
>
>
>
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Received on Mon Apr 16 2012 - 19:30:04 PDT
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