We are trying to install amber12-gpu version in gpu TESLA-2075 model in Centos 5.7.
We have uninstalled gcc4.12 version and installed gcc44-g++ version and installed gfortran44 and made soft link to gfortran.
The compilation was going fine and after some time it stopped saying error.
I am posting the error here so that I could get some help.
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gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/usr/local/apps/amber12/include -o actions.o actions.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/usr/local/apps/amber12/include -o analyze.o analyze.c
gfortran -DBINTRAJ -c -ffree-form -O3 -mtune=native -I/usr/local/apps/amber12/include -I/usr/local/apps/amber12/include -o thermo.o thermo.F90
gfortran -DBINTRAJ -c -ffree-form -O3 -mtune=native -I/usr/local/apps/amber12/include -I/usr/local/apps/amber12/include -o pubfft.o pubfft.F90
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/usr/local/apps/amber12/include -o cluster.o cluster.c
gcc -c -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/usr/local/apps/amber12/include -o clusterLib.o clusterLib.c
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \
-o rdparm main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o -L/usr/local/apps/amber12/lib -lpdb -larpack -llapack -lblas -lgfortran -w -L/usr/local/apps/amber12/lib -lnetcdf -lm
cd ../lapack && make install
make[3]: Entering directory `/usr/local/apps/amber12/AmberTools/src/lapack'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/usr/local/apps/amber12/AmberTools/src/lapack'
cd ../blas && make install
make[3]: Entering directory `/usr/local/apps/amber12/AmberTools/src/blas'
make[3]: Nothing to be done for `install'.
make[3]: Leaving directory `/usr/local/apps/amber12/AmberTools/src/blas'
gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ \
-o ptraj main.o rdparm.o dispatch.o help.o utility.o second.o io.o trajectory.o netcdf_ptraj.o parallel_ptraj.o evec.o torsion.o mask.o rms.o display.o interface.o energy.o experimental.o ptraj.o actions.o analyze.o thermo.o pubfft.o cluster.o clusterLib.o -L/usr/local/apps/amber12/lib -lpdb -larpack -llapack -lblas -lgfortran -w -L/usr/local/apps/amber12/lib -lnetcdf -lm
/bin/mv rdparm ptraj /usr/local/apps/amber12/bin
make[2]: Leaving directory `/usr/local/apps/amber12/AmberTools/src/ptraj'
(cd cpptraj && make install)
make[2]: Entering directory `/usr/local/apps/amber12/AmberTools/src/cpptraj'
cd src && make -f Makefile_at install
make[3]: Entering directory `/usr/local/apps/amber12/AmberTools/src/cpptraj/src'
g++ -c -I/usr/local/apps/amber12/include -O3 -mtune=native -DBINTRAJ -DHASGZ -DHASBZ2 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -DBINTRAJ -I/usr/local/apps/amber12/include -o main.o main.cpp
make[3]: g++: Command not found
make[3]: *** [main.o] Error 127
make[3]: Leaving directory `/usr/local/apps/amber12/AmberTools/src/cpptraj/src'
make[2]: *** [install] Error 2
make[2]: Leaving directory `/usr/local/apps/amber12/AmberTools/src/cpptraj'
make[1]: *** [serial] Error 2
make[1]: Leaving directory `/usr/local/apps/amber12/AmberTools/src'
make: *** [install] Error 2
[root.gpucc amber12]#
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Thank you in advance.
Vijay Manickam Achari
Chemistry Department,
University of Malaya,
Malaysia
vjramana.gmail.com
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Received on Mon Apr 16 2012 - 01:30:03 PDT
