Re: [AMBER] is there any tutorial for membrane protein simulations for Amber 12?

From: Albert <mailmd2011.gmail.com>
Date: Tue, 10 Apr 2012 18:22:47 +0200

Hi Ross:
   thank you so much for kind messages.
   I am really looking forward to that.

best wishes
Albert

On 04/10/2012 06:15 PM, Ross Walker wrote:
> Hi Albert,
>
> Ben Madej is putting together a tutorial as we speak / type. Please bear
> with us on this since everyone is pretty overwhelmed with general,
> pointless, administrative overload that tends to get in the way of doing
> real work these days. :-(
>
> We'll get the tutorial up as soon as we can. In the meantime you can take a
> look at section 2.10 of the AMBERTools 12 manual which give brief details
> about loading the lipid11 force field and section 2.5.8.1. Surface tension
> regulation of the AMBER 12 manual for details about the constant surface
> tension options.
>
> I apologize that this is not a great deal of info, unfortunately the
> manuscript describing the atom naming and type conventions that was supposed
> to be the reference for all this is still under review. Ben can help you
> with specific questions in the meantime but I'll encourage him to get the
> tutorial up as soon as possible.
>
> All the best
> Ross
>
>> -----Original Message-----
>> From: Albert [mailto:mailmd2011.gmail.com]
>> Sent: Tuesday, April 10, 2012 5:52 AM
>> To: AMBER Mailing List
>> Subject: [AMBER] is there any tutorial for membrane protein simulations
>> for Amber 12?
>>
>> Dear:
>>
>> It is said that the Amber 12 has been improved a lot for membrane
>> protein simulations in the maillist for quite a long time. However I
>> don't find detailed information for this aspects, and I am wondering is
>> there any tutorial for membrane protein simulations for Amber 12?
>>
>> thank you very much
>> BET
>> Albert
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>
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Received on Tue Apr 10 2012 - 09:30:05 PDT
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