Hi Albert,
Ben Madej is putting together a tutorial as we speak / type. Please bear
with us on this since everyone is pretty overwhelmed with general,
pointless, administrative overload that tends to get in the way of doing
real work these days. :-(
We'll get the tutorial up as soon as we can. In the meantime you can take a
look at section 2.10 of the AMBERTools 12 manual which give brief details
about loading the lipid11 force field and section 2.5.8.1. Surface tension
regulation of the AMBER 12 manual for details about the constant surface
tension options.
I apologize that this is not a great deal of info, unfortunately the
manuscript describing the atom naming and type conventions that was supposed
to be the reference for all this is still under review. Ben can help you
with specific questions in the meantime but I'll encourage him to get the
tutorial up as soon as possible.
All the best
Ross
> -----Original Message-----
> From: Albert [mailto:mailmd2011.gmail.com]
> Sent: Tuesday, April 10, 2012 5:52 AM
> To: AMBER Mailing List
> Subject: [AMBER] is there any tutorial for membrane protein simulations
> for Amber 12?
>
> Dear:
>
> It is said that the Amber 12 has been improved a lot for membrane
> protein simulations in the maillist for quite a long time. However I
> don't find detailed information for this aspects, and I am wondering is
> there any tutorial for membrane protein simulations for Amber 12?
>
> thank you very much
> BET
> Albert
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Received on Tue Apr 10 2012 - 09:30:04 PDT
