Re: [AMBER] a question related to force field

From: Ben Roberts <>
Date: Mon, 2 Apr 2012 10:08:32 +1200

Hi Acoot,

On 2/04/2012, at 9:59 AM, Acoot Brett wrote:
> Will you please tell me how Amber forcefields treat the N-termijnal and C-terminal residues?

There are plenty of resources available to you if you wish to find out more. You could, for example:

- Read the Amber and AmberTools web pages
- Read the Amber and AmberTools manuals
- Consult the various published articles that describe the Amber force fields
- Have a look at the data files in dat/leap in your Amber installation

If, having looked in those sources, you're still confused about some aspect of terminal residue handling, I'll echo Carlos' reply and suggest that you ask the list a specific, focused question.

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Received on Sun Apr 01 2012 - 15:30:03 PDT
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