Dear Catherine, the simplest way is to use VMD to convert AMBER mdcrd
or cdf binary trajectories to TRR format using VMD (then the TRR file
can be converted to XTC via GROMACS trjconv).
You need a frame in PDB format to prepare the index file needed by
gromacs analysis programs, use make_ndx.
HTH
Lorenzo
2012/2/28 Catein Catherine <askamber23.hotmail.com>:
>
> Dear Sir/Madam,
> How to convert AMBER's trajectory files (mdcrd) to be read or analysze by GROMACS?
> Best regards,
> CAtherine
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--
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Lorenzo Gontrani
Research associate of EDXD group
University of Rome "La Sapienza"
GSM +39 338 7615798
Email l DOT gontrani AT caspur DOT it
Webpage: http://webcaminiti/gontrani.html
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Received on Tue Feb 28 2012 - 01:30:04 PST
