Hi Catherine,
you don't need to convert the trajectory. Starting from gromacs 4.5x,
you can use gromacs
with each trajectory supported by VMD because gromacs is able to use VMD
plugin to
perform trajectory reading.
Basically:
1) Install the latest gromacs version
2) Install VMD
3) Set the variable VMD_PLUGIN_PATH to contain the complete path of the
molfile vmd directory.
In my case, for example:
VMD_PLUGIN_PATH=/apps/vmd/1.9/lib/vmd/plugins/LINUXAMD64/molfile
Little trick. You need only the libraries in the molfile directory, so
you can upload only the molfile directory ;)
Francesco
Il 28/02/2012 10:01, Catein Catherine ha scritto:
> Dear Sir/Madam,
> How to convert AMBER's trajectory files (mdcrd) to be read or analysze by GROMACS?
> Best regards,
> CAtherine
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Received on Tue Feb 28 2012 - 01:30:04 PST
