[AMBER] md stopping in TI calculation

From: leila karami <karami.leila1.gmail.com>
Date: Sun, 12 Feb 2012 15:41:06 +0330

Dear amber users

I'm doing TI.

My input files are as follows:

free_1_eq_v1_0.N
 &cntrl
 imin = 0, ntx = 1, irest = 0,
 ntpr = 1000, ntwr = 1000, ntwx = 0,
 ntf = 2, ntc = 2,
 ntb = 2, cut = 10.0,
 nstlim = 250000, dt = 0.002,
 temp0 = 300.0, ntt = 3, gamma_ln = 5,
 ntp = 1, pres0 = 1.0, taup = 0.2,
 icfe = 1, clambda = 0.1,
 ifsc = 0,
 crgmask = '.269,271,273,274,275,553,555,556,557'
 scmask =""
 /


free_1_eq_v0_0.N
 &cntrl
 imin = 0, ntx = 1, irest = 0,
 ntpr = 1000, ntwr = 1000, ntwx = 0,
 ntf = 2, ntc = 2,
 ntb = 2, cut = 10.0,
 nstlim = 250000, dt = 0.002,
 temp0 = 300.0, ntt = 3, gamma_ln = 5,
 ntp = 1, pres0 = 1.0, taup = 0.2,
 icfe = 1, clambda = 0.1,
 ifsc = 0,
 crgmask =""
 scmask =""
 /

After minimization, I run system heat up phase of a MD, the job stopped
without any error
information.

Output file:

   4. RESULTS
--------------------------------------------------------------------------------

| # of SOLUTE degrees of freedom (RNDFP): 46649.
| # of SOLVENT degrees of freedom (RNDFS): 0.
| NDFMIN = 46649. NUM_NOSHAKE = 0 CORRECTED RNDFP = 46649.
| TOTAL # of degrees of freedom (RNDF) = 46649.
 ---------------------------------------------------
 APPROXIMATING switch and d/dx switch using CUBIC SPLINE INTERPOLATION
 using 5000.0 points per unit in tabled values
 TESTING RELATIVE ERROR over r ranging from 0.0 to cutoff
| CHECK switch(x): max rel err = 0.2738E-14 at 2.422500
| CHECK d/dx switch(x): max rel err = 0.8314E-11 at 2.736960
 ---------------------------------------------------
| Local SIZE OF NONBOND LIST = 2450002
| TOTAL SIZE OF NONBOND LIST = 6626689

 NSTEP = 0 TIME(PS) = 0.000 TEMP(K) = 0.00 PRESS =
-6151.7
 Etot = -69103.4699 EKtot = 0.0000 EPtot =
-69103.4699
 BOND = 43.5638 ANGLE = 284.9209 DIHED =
548.3179
 1-4 NB = 256.3398 1-4 EEL = -2154.0057 VDWAALS =
4338.2557
 EELEC = -72420.8623 EHBOND = 0.0000 RESTRAINT =
0.0000
 DV/DL = 246.0503
 EKCMT = 0.0000 VIRIAL = 39658.7211 VOLUME =
298583.2222
                                                    Density =
0.7884
 Ewald error estimate: 0.9303E-03
 ------------------------------------------------------------------------------

What is reason of this case?

Any help will highly appreciated.
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Received on Sun Feb 12 2012 - 04:30:04 PST
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