Re: [AMBER] md stopping in TI calculation

From: case <case.biomaps.rutgers.edu>
Date: Sun, 12 Feb 2012 07:45:52 -0500

On Sun, Feb 12, 2012, leila karami wrote:
>
> I'm doing TI.
>
>
> After minimization, I run system heat up phase of a MD, the job stopped
> without any error
> information.
>

Did you look at the output file from the second group? There may be
information there.
Try a short run, nstlim=10, ntpr=1.
Try a standard run (with ifce=0).
You might post the command line arguments and groupfile that you used?

[Aside: generally, you want to equilibrate first at constant volume, then
later at constant pressure. But this probably isn't your problem.]

....dac

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Sun Feb 12 2012 - 05:00:14 PST
Custom Search