Re: [AMBER] installation

From: David A Case <case.biomaps.rutgers.edu>
Date: Fri, 10 Feb 2012 08:48:18 -0500

On Fri, Feb 10, 2012, subrata paul wrote:
>
> Yes, there is no such directory of file bin/xaLeap.

Look in your config.h file: what does assign MAKE_XLEAP to? If it is not
set to "install_xleap", then the configure script found some problem. You
need to run configure again to find out what. Be sure to install the needed
packages (since you are missing zlib and bzlib for sure.) See:

   http://ambermd.org/ubuntu.html

for help.

If MAKE_XLEAP *is* assigned to install_xleap, then cd to the
AmberTools/src/leap directory and type "make install". Look carefully for
what is going wrong.

>
> When typed *tleap* in the terminal
>
> It showing the path..
>
> I: Adding /home/subrata/AMBER/amber10/dat/leap/prep to search path.
> -I: Adding /home/subrata/AMBER/amber10/dat/leap/lib to search path.
> -I: Adding /home/subrata/AMBER/amber10/dat/leap/parm to search path.
> -I: Adding /home/subrata/AMBER/amber10/dat/leap/cmd to search path.
>
> It shows the path amber10 not amber11/ambertools/
>
> is ambertools1.5 installed properly in the path?

Type "which tleap" to see which version of tleap you are running. Adjust
your PATH variable to get the amber11/bin directory ahead of any other
Amber-related directories.

Be sure your AMBERHOME variable set correctly set: it needs to point to the
location of the amber11 tree, *not* to the amber10 tree.

....dac


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Received on Fri Feb 10 2012 - 06:00:04 PST
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