Thanks for the advice, unfortunately I'm still getting the same error
even after running "make distclean" in the mtkpp directory. I have also
tried re-extracting and starting from scratch (several times), with no
success. I know that at least one user has installed Amber in their
home directory, could this be part of the problem? Here I'm attempting
a system install to allow access to all users. (I do make sure
$AMBERHOME is correctly defined when I'm attempting this installation.)
Thanks,
Kirk
-----Original Message-----
From: Jason Swails [mailto:jason.swails.gmail.com]
Sent: Wednesday, January 18, 2012 12:38 PM
To: AMBER Mailing List
Subject: Re: [AMBER] AmberTools Installation Error
I've never seen this issue before. It seems to be a strange compilation
error, since it's complaining of a directory that's not really a
directory (/include). This would happen if an environment variable was
not set (like AMBERHOME), and the flag was -I$(AMBERHOME) or
something...
My suggestion is to go to $AMBERHOME/AmberTools/src/mtkpp/ and run "make
distclean" to wipe out the MTK++ temporary files, then re-run configure
making sure that $AMBERHOME is set. If that still doesn't work, try
re-extracting both of the tarballs and starting from scratch.
Good luck,
Jason
On Wed, Jan 18, 2012 at 11:59 AM, Hevener, Kirk <khevener.uic.edu>
wrote:
>
> Dear AMBER Users:
>
> I'm having difficulty installing AmberTools 1.5 on an RHEL5 WS,
> x86_64 system (2.6.18-274.12.1.el5). I can configure (serial)
> successfully but 'make serial' throws the following error:
>
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../..
> -I/usr/local/amber11/AmberTools/src/boost-1.38.0 -I/include -I./..
> -DNDEBUG -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB
> -MT gaWorld.lo -MD -MP -MF .deps/gaWorld.Tpo -c gaWorld.cpp -o
> gaWorld.o
> cc1plus: error: /include: not a directory
> make[3]: *** [gaWorld.lo] Error 1
> make[3]: Leaving directory
`/usr/local/amber11/AmberTools/src/mtkpp/src/GA'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory
`/usr/local/amber11/AmberTools/src/mtkpp/src'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/mtkpp'
> make: *** [install_mtkpp] Error 2
>
> This is interesting because I have successfully installed on
> workstations very similar in our group. I have applied the latest
> patches and set $AMBERHOME prior to configuring. What am I missing
here?
>
> Thanks for any assistance,
>
> Kirk Hevener
> Postdoctoral Fellow, UIC
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Jan 19 2012 - 06:30:02 PST
