I've never seen this issue before. It seems to be a strange compilation
error, since it's complaining of a directory that's not really a directory
(/include). This would happen if an environment variable was not set (like
AMBERHOME), and the flag was -I$(AMBERHOME) or something...
My suggestion is to go to $AMBERHOME/AmberTools/src/mtkpp/ and run "make
distclean" to wipe out the MTK++ temporary files, then re-run configure
making sure that $AMBERHOME is set. If that still doesn't work, try
re-extracting both of the tarballs and starting from scratch.
Good luck,
Jason
On Wed, Jan 18, 2012 at 11:59 AM, Hevener, Kirk <khevener.uic.edu> wrote:
>
> Dear AMBER Users:
>
> I'm having difficulty installing AmberTools 1.5 on an RHEL5 WS, x86_64
> system (2.6.18-274.12.1.el5). I can configure (serial) successfully but
> 'make serial' throws the following error:
>
> libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../..
> -I/usr/local/amber11/AmberTools/src/boost-1.38.0 -I/include -I./.. -DNDEBUG
> -DUSE_TINYXML -DTIXML_USE_STL -DC99_OK -O2 -fPIC -DHAVE_ZLIB -MT gaWorld.lo
> -MD -MP -MF .deps/gaWorld.Tpo -c gaWorld.cpp -o gaWorld.o
> cc1plus: error: /include: not a directory
> make[3]: *** [gaWorld.lo] Error 1
> make[3]: Leaving directory `/usr/local/amber11/AmberTools/src/mtkpp/src/GA'
> make[2]: *** [install-recursive] Error 1
> make[2]: Leaving directory `/usr/local/amber11/AmberTools/src/mtkpp/src'
> make[1]: *** [install-recursive] Error 1
> make[1]: Leaving directory `/usr/local/amber11/AmberTools/src/mtkpp'
> make: *** [install_mtkpp] Error 2
>
> This is interesting because I have successfully installed on workstations
> very similar in our group. I have applied the latest patches and set
> $AMBERHOME prior to configuring. What am I missing here?
>
> Thanks for any assistance,
>
> Kirk Hevener
> Postdoctoral Fellow, UIC
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jan 18 2012 - 11:00:02 PST
