It sounds to me like the download didn't finish. Do you have any way of
verifying that?
On Thu, Dec 29, 2011 at 12:49 AM, Puspita Halder <puspitah.gmail.com> wrote:
> Hi all,
>
> I downloaded the AmberTools-1.5.tar.bz2 from the link:
> http://ambermd.org/AmberTools-get.html. But when I tried to extract the
> tar
> file, after extraxting a major portion of it shows some kind of error
> messages like the following:
>
> bzip2: Compressed file ends unexpectedly;
> perhaps it is corrupted? *Possible* reason follows.
> bzip2: Inappropriate ioctl for device
> Input file = (stdin), output file = (stdout)
>
> It is possible that the compressed file(s) have become corrupted.
> You can use the -tvv option to test integrity of such files.
>
> You can use the `bzip2recover' program to attempt to recover
> data from undamaged sections of corrupted files.
>
> amber11/AmberTools/test/sqm/nma/nma.pm6.go.out.save
> amber11/AmberTools/test/sqm/nma/nma.pm6.go.in
> amber11/AmberTools/test/sqm/nma/nma.pm3.go.out.save
> tar: Child returned status 2
> tar: Error exit delayed from previous errors
> I tried re-downloading but the error message was same. Could someone tell
> me what exactly the problem is.
>
> We have amber9 installed in our lab machine but going through the amber
> mailing list it seemed to me that I can also use Ambertools-1.5 with amber9
> version.
>
> Thanking you
> Puspita Halder
> _______________________________________________
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> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Thu Dec 29 2011 - 07:30:03 PST
