Dear all,
I am having difficulty in installing AmberTools-1.5/amber11 (with all
latest bugfixes) on suse 10.
./configure -nopython gnu
ok
make serial
make[1]: Entering directory `/home/shahid/amber11/AmberTools/src/rism'
cpp -traditional -P -DBINTRAJ -DRISM -DRISM_CRDINTERP -DRISM_DX
-DRISM_LINPROJ safemem.f > _safemem.f
gfortran -c -O3 -ffree-form -o safemem.o _safemem.f
_safemem.f: In function ‘safemem_realloc_2d_character’:
_safemem.f:748: internal compiler error: Segmentation fault
Please submit a full bug report,
with preprocessed source if appropriate.
See <URL:
http://bugs.opensuse.org> for instructions.
make[1]: *** [safemem.o] Error 1
make[1]: Leaving directory `/home/shahid/amber11/AmberTools/src/rism'
make: *** [serial] Error 2
About the platform:
SUSE Linux Enterprise Server 10 (x86_64)
VERSION = 10
PATCHLEVEL = 2
gnu compilers:
gcc -v
Using built-in specs.
Target: x86_64-suse-linux
Configured with: ../configure --enable-threads=posix --prefix=/usr
--with-local-prefix=/usr/local --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
--enable-languages=c,c++,objc,fortran,obj-c++,java,ada
--enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.1.2
--enable-ssp --disable-libssp --disable-libgcj --with-slibdir=/lib64
--with-system-zlib --enable-shared --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --program-suffix=
--enable-version-specific-runtime-libs --without-system-libunwind
--with-cpu=generic --host=x86_64-suse-linux
Thread model: posix
gcc version 4.1.2 20070115 (SUSE Linux)
gfortran -v
Using built-in specs.
Target: x86_64-suse-linux
Configured with: ../configure --enable-threads=posix --prefix=/usr
--with-local-prefix=/usr/local --infodir=/usr/share/info
--mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64
--enable-languages=c,c++,objc,fortran,obj-c++,java,ada
--enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.1.2
--enable-ssp --disable-libssp --disable-libgcj --with-slibdir=/lib64
--with-system-zlib --enable-shared --enable-__cxa_atexit
--enable-libstdcxx-allocator=new --program-suffix=
--enable-version-specific-runtime-libs --without-system-libunwind
--with-cpu=generic --host=x86_64-suse-linux
Thread model: posix
gcc version 4.1.2 20070115 (SUSE Linux)
I have successfully installed the same on other machines (Scientific Linux
SL release 5.5 or 6.0) with openmpi and cuda and gcc 4.1.2 and 4.4.4, but
not on opensuse, can anyone help me please.
Thanks,
Best regards,
--
Shahid.
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Received on Sat Dec 03 2011 - 04:00:03 PST
