This was addressed by bugfix.22 for AmberTools 1.5.
HTH,
Jason
On Mon, Nov 21, 2011 at 10:37 AM, Jorgen Simonsen <jorgen589.gmail.com>wrote:
> Thanks - it solved the issue with python-errors though a new one came
>
> gfortran -c -O3 -mtune=generic -ffree-form -o safemem.o _safemem.f
> _safemem.f:107.40:
>
> type(memTracker),private :: totalMem
> 1
> Error: Object 'totalmem' at (1) must have the SAVE attribute for
> default initialization of a component
> make[1]: *** [safemem.o] Error 1
> make: *** [serial] Error 2
>
>
>
> On Mon, Nov 21, 2011 at 4:04 PM, Jason Swails <jason.swails.gmail.com>
> wrote:
> > Hello,
> >
> > Python does not build on OS X Lion. Try configuring with the -nopython
> > flag. We won't be distributing Python with Amber/AmberTools in the
> future.
> >
> > HTH,
> > Jason
> >
> > On Mon, Nov 21, 2011 at 9:47 AM, Jorgen Simonsen <jorgen589.gmail.com
> >wrote:
> >
> >> Hi all
> >>
> >> I am trying to install AmberTools in Lion Os with the following version
> >>
> >> uname -v
> >>
> >> Darwin Kernel Version 11.2.0: Tue Aug 9 20:54:00 PDT 2011;
> >> root:xnu-1699.24.8~1/RELEASE_X86_64
> >>
> >> I use the configure script with the following parameters as specified
> >>
> >> ./configure -macAccelerate gnu
> >>
> >> and get the following error
> >>
> >> /usr/bin/libtool: can't locate file for: -lSystemStubs
> >> /usr/bin/libtool: file: -lSystemStubs is not an object file (not
> >> allowed in a library)
> >> make[1]: *** [Python.framework/Versions/2.6/Python] Error 1
> >> make: *** [python] Error 2
> >>
> >> my version of python is 2.7.2 and gcc is 4.2.1
> >>
> >> >From the python2.6_config.log file I get the flooding warning
> >>
> >> configure: WARNING:
> >>
> >> By default, distutils will build C++ extension modules with "c++".
> >> If this is not intended, then set CXX on the configure command line.
> >>
> >> How to fix this - thanks
> >>
> >> _______________________________________________
> >> AMBER mailing list
> >> AMBER.ambermd.org
> >> http://lists.ambermd.org/mailman/listinfo/amber
> >>
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
> _______________________________________________
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> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Nov 21 2011 - 08:30:02 PST
