Thanks - it solved the issue with python-errors though a new one came
gfortran -c -O3 -mtune=generic -ffree-form -o safemem.o _safemem.f
_safemem.f:107.40:
type(memTracker),private :: totalMem
1
Error: Object 'totalmem' at (1) must have the SAVE attribute for
default initialization of a component
make[1]: *** [safemem.o] Error 1
make: *** [serial] Error 2
On Mon, Nov 21, 2011 at 4:04 PM, Jason Swails <jason.swails.gmail.com> wrote:
> Hello,
>
> Python does not build on OS X Lion. Try configuring with the -nopython
> flag. We won't be distributing Python with Amber/AmberTools in the future.
>
> HTH,
> Jason
>
> On Mon, Nov 21, 2011 at 9:47 AM, Jorgen Simonsen <jorgen589.gmail.com>wrote:
>
>> Hi all
>>
>> I am trying to install AmberTools in Lion Os with the following version
>>
>> uname -v
>>
>> Darwin Kernel Version 11.2.0: Tue Aug 9 20:54:00 PDT 2011;
>> root:xnu-1699.24.8~1/RELEASE_X86_64
>>
>> I use the configure script with the following parameters as specified
>>
>> ./configure -macAccelerate gnu
>>
>> and get the following error
>>
>> /usr/bin/libtool: can't locate file for: -lSystemStubs
>> /usr/bin/libtool: file: -lSystemStubs is not an object file (not
>> allowed in a library)
>> make[1]: *** [Python.framework/Versions/2.6/Python] Error 1
>> make: *** [python] Error 2
>>
>> my version of python is 2.7.2 and gcc is 4.2.1
>>
>> >From the python2.6_config.log file I get the flooding warning
>>
>> configure: WARNING:
>>
>> By default, distutils will build C++ extension modules with "c++".
>> If this is not intended, then set CXX on the configure command line.
>>
>> How to fix this - thanks
>>
>> _______________________________________________
>> AMBER mailing list
>> AMBER.ambermd.org
>> http://lists.ambermd.org/mailman/listinfo/amber
>>
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
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Received on Mon Nov 21 2011 - 08:00:04 PST
