On Mon, Nov 21, 2011 at 10:16 AM, Gustavo Seabra
<gustavo.seabra.gmail.com>wrote:
> Hi Jason,
>
> What will happen to the Python-based tools that are currently part of
> AmberTools?
>
They will just use the system Python.
>
> Gustavo Seabra
> Professor Adjunto
> Departamento de Química Fundamental
> Universidade Federal de Pernambuco
> Fone: +55-81-2126-7417
>
>
> On Mon, Nov 21, 2011 at 12:04 PM, Jason Swails <jason.swails.gmail.com
> >wrote:
>
> > Hello,
> >
> > Python does not build on OS X Lion. Try configuring with the -nopython
> > flag. We won't be distributing Python with Amber/AmberTools in the
> future.
> >
> > HTH,
> > Jason
> >
> > On Mon, Nov 21, 2011 at 9:47 AM, Jorgen Simonsen <jorgen589.gmail.com
> > >wrote:
> >
> > > Hi all
> > >
> > > I am trying to install AmberTools in Lion Os with the following version
> > >
> > > uname -v
> > >
> > > Darwin Kernel Version 11.2.0: Tue Aug 9 20:54:00 PDT 2011;
> > > root:xnu-1699.24.8~1/RELEASE_X86_64
> > >
> > > I use the configure script with the following parameters as specified
> > >
> > > ./configure -macAccelerate gnu
> > >
> > > and get the following error
> > >
> > > /usr/bin/libtool: can't locate file for: -lSystemStubs
> > > /usr/bin/libtool: file: -lSystemStubs is not an object file (not
> > > allowed in a library)
> > > make[1]: *** [Python.framework/Versions/2.6/Python] Error 1
> > > make: *** [python] Error 2
> > >
> > > my version of python is 2.7.2 and gcc is 4.2.1
> > >
> > > >From the python2.6_config.log file I get the flooding warning
> > >
> > > configure: WARNING:
> > >
> > > By default, distutils will build C++ extension modules with "c++".
> > > If this is not intended, then set CXX on the configure command line.
> > >
> > > How to fix this - thanks
> > >
> > > _______________________________________________
> > > AMBER mailing list
> > > AMBER.ambermd.org
> > > http://lists.ambermd.org/mailman/listinfo/amber
> > >
> >
> >
> >
> > --
> > Jason M. Swails
> > Quantum Theory Project,
> > University of Florida
> > Ph.D. Candidate
> > 352-392-4032
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
> _______________________________________________
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>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Mon Nov 21 2011 - 08:30:03 PST
