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-- Jason M. Swails Quantum Theory Project, University of Florida Ph.D. Candidate 352-392-4032 On Oct 6, 2011, at 7:01 PM, Gamal Akabani <akabani.ne.tamu.edu> wrote: > I am having problems installing AmberTools in a Macintosh computer. > I am using gcc 4.2 and gfortran. The ./config gnu works fine for what I read. > However, when invoking the “make install” command I get the following error > > rm -f libpython2.6.a > ar cr libpython2.6.a Modules/getbuildinfo.o > ar cr libpython2.6.a Parser/acceler.o Parser/grammar1.o Parser/listnode.o Parser/node.o Parser/parser.o Parser/parsetok.o Parser/bitset.o Parser/metagrammar.o Parser/firstsets.o Parser/grammar.o Parser/pgen.o Parser/myreadline.o Parser/tokenizer.o > ar cr libpython2.6.a Objects/abstract.o Objects/boolobject.o Objects/bufferobject.o Objects/bytes_methods.o Objects/bytearrayobject.o Objects/cellobject.o Objects/classobject.o Objects/cobject.o Objects/codeobject.o Objects/complexobject.o Objects/descrobject.o Objects/enumobject.o Objects/exceptions.o Objects/genobject.o Objects/fileobject.o Objects/floatobject.o Objects/frameobject.o Objects/funcobject.o Objects/intobject.o Objects/iterobject.o Objects/listobject.o Objects/longobject.o Objects/dictobject.o Objects/methodobject.o Objects/moduleobject.o Objects/object.o Objects/obmalloc.o Objects/rangeobject.o Objects/setobject.o Objects/sliceobject.o Objects/stringobject.o Objects/structseq.o Objects/tupleobject.o Objects/typeobject.o Objects/weakrefobject.o Objects/unicodeobject.o Objects/unicodectype.o > ar cr libpython2.6.a Python/_warnings.o Python/Python-ast.o Python/asdl.o Python/ast.o Python/bltinmodule.o Python/ceval.o Python/compile.o Python/codecs.o Python/errors.o Python/frozen.o Python/frozenmain.o Python/future.o Python/getargs.o Python/getcompiler.o Python/getcopyright.o Python/getmtime.o Python/getplatform.o Python/getversion.o Python/graminit.o Python/import.o Python/importdl.o Python/marshal.o Python/modsupport.o Python/mystrtoul.o Python/mysnprintf.o Python/peephole.o Python/pyarena.o Python/pyfpe.o Python/pymath.o Python/pystate.o Python/pythonrun.o Python/structmember.o Python/symtable.o Python/sysmodule.o Python/traceback.o Python/getopt.o Python/pystrcmp.o Python/pystrtod.o Python/formatter_unicode.o Python/formatter_string.o Python/dynload_shlib.o Python/mactoolboxglue.o Python/thread.o > /usr/bin/ranlib: file: libpython2.6.a(pymath.o) has no symbols > ar cr libpython2.6.a Modules/config.o Modules/getpath.o Modules/main.o Modules/gcmodule.o > /usr/bin/ranlib: file: libpython2.6.a(pymath.o) has no symbols > ar cr libpython2.6.a Modules/threadmodule.o Modules/signalmodule.o Modules/posixmodule.o Modules/errnomodule.o Modules/pwdmodule.o Modules/_sre.o Modules/_codecsmodule.o Modules/zipimport.o Modules/symtablemodule.o Modules/xxsubtype.o > /usr/bin/ranlib: file: libpython2.6.a(pymath.o) has no symbols > true libpython2.6.a > /usr/bin/install -c -d -m 755 Python.framework/Versions/2.6 > if test ""; then \ > /usr/bin/gcc-4.2 -o Python.framework/Versions/2.6/Python -dynamiclib \ > -isysroot "" \ > -all_load libpython2.6.a -Wl,-single_module \ > -install_name /Applications/amber11/amber11/Python.framework/Versions/2.6/Python \ > -compatibility_version 2.6 \ > -current_version 2.6; \ > else \ > /usr/bin/libtool -o Python.framework/Versions/2.6/Python -dynamic libpython2.6.a \ > -lSystem -lSystemStubs -arch_only x86_64 -install_name /Applications/amber11/amber11/Python.framework/Versions/2.6/Python -compatibility_version 2.6 -current_version 2.6 ;\ > fi > /usr/bin/libtool: can't locate file for: -lSystemStubs > /usr/bin/libtool: file: -lSystemStubs is not an object file (not allowed in a library) > make[1]: *** [Python.framework/Versions/2.6/Python] Error 1 > > I am no guru and no expert on AmberTools. > Any help will be appreciated. > > Thank you! > > Gamal Akabani, Ph.D. > Associate Professor > Department of Nuclear Engineering > Texas A&M Institute for Preclinical Studies > Texas A&M University > Zachry Engineering Center > Room 58H > 3133 TAMU > College Station, TX 77843-3133 > (979) 458-1699 Phone > (979) 676-0695 Mobile > (979) 845-6443 FAX > > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Sun Oct 09 2011 - 06:30:03 PDT