I am having problems installing AmberTools in a Macintosh computer.
I am using gcc 4.2 and gfortran. The ./config gnu works fine for what I read.
However, when invoking the “make install” command I get the following error
rm -f libpython2.6.a
ar cr libpython2.6.a Modules/getbuildinfo.o
ar cr libpython2.6.a Parser/acceler.o Parser/grammar1.o Parser/listnode.o Parser/node.o Parser/parser.o Parser/parsetok.o Parser/bitset.o Parser/metagrammar.o Parser/firstsets.o Parser/grammar.o Parser/pgen.o Parser/myreadline.o Parser/tokenizer.o
ar cr libpython2.6.a Objects/abstract.o Objects/boolobject.o Objects/bufferobject.o Objects/bytes_methods.o Objects/bytearrayobject.o Objects/cellobject.o Objects/classobject.o Objects/cobject.o Objects/codeobject.o Objects/complexobject.o Objects/descrobject.o Objects/enumobject.o Objects/exceptions.o Objects/genobject.o Objects/fileobject.o Objects/floatobject.o Objects/frameobject.o Objects/funcobject.o Objects/intobject.o Objects/iterobject.o Objects/listobject.o Objects/longobject.o Objects/dictobject.o Objects/methodobject.o Objects/moduleobject.o Objects/object.o Objects/obmalloc.o Objects/rangeobject.o Objects/setobject.o Objects/sliceobject.o Objects/stringobject.o Objects/structseq.o Objects/tupleobject.o Objects/typeobject.o Objects/weakrefobject.o Objects/unicodeobject.o Objects/unicodectype.o
ar cr libpython2.6.a Python/_warnings.o Python/Python-ast.o Python/asdl.o Python/ast.o Python/bltinmodule.o Python/ceval.o Python/compile.o Python/codecs.o Python/errors.o Python/frozen.o Python/frozenmain.o Python/future.o Python/getargs.o Python/getcompiler.o Python/getcopyright.o Python/getmtime.o Python/getplatform.o Python/getversion.o Python/graminit.o Python/import.o Python/importdl.o Python/marshal.o Python/modsupport.o Python/mystrtoul.o Python/mysnprintf.o Python/peephole.o Python/pyarena.o Python/pyfpe.o Python/pymath.o Python/pystate.o Python/pythonrun.o Python/structmember.o Python/symtable.o Python/sysmodule.o Python/traceback.o Python/getopt.o Python/pystrcmp.o Python/pystrtod.o Python/formatter_unicode.o Python/formatter_string.o Python/dynload_shlib.o Python/mactoolboxglue.o Python/thread.o
/usr/bin/ranlib: file: libpython2.6.a(pymath.o) has no symbols
ar cr libpython2.6.a Modules/config.o Modules/getpath.o Modules/main.o Modules/gcmodule.o
/usr/bin/ranlib: file: libpython2.6.a(pymath.o) has no symbols
ar cr libpython2.6.a Modules/threadmodule.o Modules/signalmodule.o Modules/posixmodule.o Modules/errnomodule.o Modules/pwdmodule.o Modules/_sre.o Modules/_codecsmodule.o Modules/zipimport.o Modules/symtablemodule.o Modules/xxsubtype.o
/usr/bin/ranlib: file: libpython2.6.a(pymath.o) has no symbols
true libpython2.6.a
/usr/bin/install -c -d -m 755 Python.framework/Versions/2.6
if test ""; then \
/usr/bin/gcc-4.2 -o Python.framework/Versions/2.6/Python -dynamiclib \
-isysroot "" \
-all_load libpython2.6.a -Wl,-single_module \
-install_name /Applications/amber11/amber11/Python.framework/Versions/2.6/Python \
-compatibility_version 2.6 \
-current_version 2.6; \
else \
/usr/bin/libtool -o Python.framework/Versions/2.6/Python -dynamic libpython2.6.a \
-lSystem -lSystemStubs -arch_only x86_64 -install_name /Applications/amber11/amber11/Python.framework/Versions/2.6/Python -compatibility_version 2.6 -current_version 2.6 ;\
fi
/usr/bin/libtool: can't locate file for: -lSystemStubs
/usr/bin/libtool: file: -lSystemStubs is not an object file (not allowed in a library)
make[1]: *** [Python.framework/Versions/2.6/Python] Error 1
I am no guru and no expert on AmberTools.
Any help will be appreciated.
Thank you!
Gamal Akabani, Ph.D.
Associate Professor
Department of Nuclear Engineering
Texas A&M Institute for Preclinical Studies
Texas A&M University
Zachry Engineering Center
Room 58H
3133 TAMU
College Station, TX 77843-3133
(979) 458-1699 Phone
(979) 676-0695 Mobile
(979) 845-6443 FAX
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Received on Thu Oct 06 2011 - 16:30:03 PDT
