Thank you for the information. Is there a way of representing the solvent
accessible surface visually in graphics.
Thanks
Kirtana
On Fri, Oct 7, 2011 at 8:34 AM, Daniel Roe <daniel.r.roe.gmail.com> wrote:
> Hi,
>
> On Thu, Oct 6, 2011 at 5:22 PM, kirtana S <skirtana4.gmail.com> wrote:
> > Thanks for all suggestion. Can you tell how can I get solvent accesible
> > surface area of selected residues .
>
> I'm not sure you can do that with sander. With cpptraj you can do this
> by specifying a mask, so for example if you just want the SASA of
> residues 5 to 10:
>
> surf :5-10 out surf.dat
>
> -Dan
>
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Received on Fri Oct 07 2011 - 08:30:05 PDT
