Re: [AMBER] Solvent accessible area

From: Daniel Roe <daniel.r.roe.gmail.com>
Date: Fri, 7 Oct 2011 08:34:03 -0400

Hi,

On Thu, Oct 6, 2011 at 5:22 PM, kirtana S <skirtana4.gmail.com> wrote:
> Thanks for all suggestion. Can you tell how can I get solvent accesible
> surface area of selected residues .

I'm not sure you can do that with sander. With cpptraj you can do this
by specifying a mask, so for example if you just want the SASA of
residues 5 to 10:

surf :5-10 out surf.dat

-Dan

_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Oct 07 2011 - 06:00:03 PDT
Custom Search