Jason, Thanks. That did the trick. Is that documented in the patches
section? I patched the code but perhaps I overlooked this part.
On Tue, Jul 26, 2011 at 11:37 PM, Jason Swails <jason.swails.gmail.com>wrote:
> Did you run the script AT15_Amber11.py after running configure? (This is
> only applicable if you tried building AmberTools 1.5 with Amber 11).
>
> This error occurs if you forget to do that.
>
> HTH,
> Jason
>
> On Tue, Jul 26, 2011 at 10:04 PM, Carlos P Sosa <cpsosa.msi.umn.edu>
> wrote:
>
> >
> >
> >
> > Hello,
> >
> > Is this a know problem? I am trying to install AMBER 11 on an x86
> machine
> > with the gnu compiler. Ambertools builds fine but then the Makefile in
> > sander gets lost since it is looking for the netcdf in the wrong
> > directory.
> >
> > Any ideas or previous e-mails that solved this issue
> >
> > Thanks
> >
> > make[5]: Leaving directory `/home/applications/AMBER/11/
> > amber11/AmberTools/src/netcdf/src'
> > make[4]: Leaving directory
> > `/home/applications/AMBER/11/amber11/AmberTools/src/netcdf/src'
> > make[3]: Leaving directory
> > `/home/applications/AMBER/11/amber11/AmberTools/src/netcdf/src'
> > make[2]: Leaving directory
> > `/homeapplications/AMBER/11/amber11/AmberTools/src/netcdf/src'
> > cp ../../AmberTools/src/netcdf/include/*.mod .
> > cp: cannot stat `../../AmberTools/src/netcdf/include/*.mod': No such file
> > or directory
> > make[1]: *** [netcdf.mod] Error 1
> > make[1]: Leaving directory
> > `/home/cpsosa/applications/AMBER/11/amber11/src/sander'
> > make: *** [serial] Error 2
> >
> >
> > --
> > Carlos P Sosa
> > Biomedical Informatics and Computational Biology (BICB) Consultant
> > Minnesota Supercomputing Institute
> > for Advanced Computational Research
> > University of Minnesota
> > Walter Library 509
> > 117 Pleasant Street
> > Minneapolis, MN 55455
> >
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
> >
>
>
>
> --
> Jason M. Swails
> Quantum Theory Project,
> University of Florida
> Ph.D. Candidate
> 352-392-4032
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Carlos P Sosa, Ph.D.
*Biomedical Informatics and Computational Biology* (BICB) Consultant
Minnesota Supercomputing Institute
for Advanced Computational Research
University of Minnesota
Walter Library 509
117 Pleasant Street
Minneapolis, MN 55455
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Wed Jul 27 2011 - 10:30:03 PDT
