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-- Jason M. Swails Quantum Theory Project, University of Florida Ph.D. Candidate 352-392-4032 On Jul 27, 2011, at 1:25 PM, Carlos Sosa <sosa0006.r.umn.edu> wrote: > Jason, Thanks. That did the trick. Is that documented in the patches > section? I patched the code but perhaps I overlooked this part. > > On Tue, Jul 26, 2011 at 11:37 PM, Jason Swails <jason.swails.gmail.com>wrote: > >> Did you run the script AT15_Amber11.py after running configure? (This is >> only applicable if you tried building AmberTools 1.5 with Amber 11). >> >> This error occurs if you forget to do that. >> >> HTH, >> Jason >> >> On Tue, Jul 26, 2011 at 10:04 PM, Carlos P Sosa <cpsosa.msi.umn.edu> >> wrote: >> >>> >>> >>> >>> Hello, >>> >>> Is this a know problem? I am trying to install AMBER 11 on an x86 >> machine >>> with the gnu compiler. Ambertools builds fine but then the Makefile in >>> sander gets lost since it is looking for the netcdf in the wrong >>> directory. >>> >>> Any ideas or previous e-mails that solved this issue >>> >>> Thanks >>> >>> make[5]: Leaving directory `/home/applications/AMBER/11/ >>> amber11/AmberTools/src/netcdf/src' >>> make[4]: Leaving directory >>> `/home/applications/AMBER/11/amber11/AmberTools/src/netcdf/src' >>> make[3]: Leaving directory >>> `/home/applications/AMBER/11/amber11/AmberTools/src/netcdf/src' >>> make[2]: Leaving directory >>> `/homeapplications/AMBER/11/amber11/AmberTools/src/netcdf/src' >>> cp ../../AmberTools/src/netcdf/include/*.mod . >>> cp: cannot stat `../../AmberTools/src/netcdf/include/*.mod': No such file >>> or directory >>> make[1]: *** [netcdf.mod] Error 1 >>> make[1]: Leaving directory >>> `/home/cpsosa/applications/AMBER/11/amber11/src/sander' >>> make: *** [serial] Error 2 >>> >>> >>> -- >>> Carlos P Sosa >>> Biomedical Informatics and Computational Biology (BICB) Consultant >>> Minnesota Supercomputing Institute >>> for Advanced Computational Research >>> University of Minnesota >>> Walter Library 509 >>> 117 Pleasant Street >>> Minneapolis, MN 55455 >>> >>> >>> _______________________________________________ >>> AMBER mailing list >>> AMBER.ambermd.org >>> http://lists.ambermd.org/mailman/listinfo/amber >>> >> >> >> >> -- >> Jason M. Swails >> Quantum Theory Project, >> University of Florida >> Ph.D. Candidate >> 352-392-4032 >> _______________________________________________ >> AMBER mailing list >> AMBER.ambermd.org >> http://lists.ambermd.org/mailman/listinfo/amber >> > > > > -- > Carlos P Sosa, Ph.D. > *Biomedical Informatics and Computational Biology* (BICB) Consultant > Minnesota Supercomputing Institute > for Advanced Computational Research > University of Minnesota > Walter Library 509 > 117 Pleasant Street > Minneapolis, MN 55455 > _______________________________________________ > AMBER mailing list > AMBER.ambermd.org > http://lists.ambermd.org/mailman/listinfo/amber _______________________________________________ AMBER mailing list AMBER.ambermd.org http://lists.ambermd.org/mailman/listinfo/amberReceived on Wed Jul 27 2011 - 12:00:04 PDT