Did you run the script AT15_Amber11.py after running configure? (This is
only applicable if you tried building AmberTools 1.5 with Amber 11).
This error occurs if you forget to do that.
HTH,
Jason
On Tue, Jul 26, 2011 at 10:04 PM, Carlos P Sosa <cpsosa.msi.umn.edu> wrote:
>
>
>
> Hello,
>
> Is this a know problem? I am trying to install AMBER 11 on an x86 machine
> with the gnu compiler. Ambertools builds fine but then the Makefile in
> sander gets lost since it is looking for the netcdf in the wrong
> directory.
>
> Any ideas or previous e-mails that solved this issue
>
> Thanks
>
> make[5]: Leaving directory `/home/applications/AMBER/11/
> amber11/AmberTools/src/netcdf/src'
> make[4]: Leaving directory
> `/home/applications/AMBER/11/amber11/AmberTools/src/netcdf/src'
> make[3]: Leaving directory
> `/home/applications/AMBER/11/amber11/AmberTools/src/netcdf/src'
> make[2]: Leaving directory
> `/homeapplications/AMBER/11/amber11/AmberTools/src/netcdf/src'
> cp ../../AmberTools/src/netcdf/include/*.mod .
> cp: cannot stat `../../AmberTools/src/netcdf/include/*.mod': No such file
> or directory
> make[1]: *** [netcdf.mod] Error 1
> make[1]: Leaving directory
> `/home/cpsosa/applications/AMBER/11/amber11/src/sander'
> make: *** [serial] Error 2
>
>
> --
> Carlos P Sosa
> Biomedical Informatics and Computational Biology (BICB) Consultant
> Minnesota Supercomputing Institute
> for Advanced Computational Research
> University of Minnesota
> Walter Library 509
> 117 Pleasant Street
> Minneapolis, MN 55455
>
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Candidate
352-392-4032
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Received on Tue Jul 26 2011 - 22:00:02 PDT
