Dear Raja, I use VMD to convert the Gromacs trajectory into dcd
format, and then use ptraj to read the dcd file and write the mdcrd
(or AMBER netcdf) trajectory. It's one of the possible ways, and it
works fine to me.
Always remember to save a structure file (PDB, GRO).
You could also prepare an ASCII trajectory of PDB files, or XYZ files.
The problem, in those cases, are the box dimensions (for NPT
trajectories).
HTH
Lorenzo
2011/6/16 Raja Pandian <chemistryraj.gmail.com>:
> Dear All,
>
> I have created Amber input file (.prmtop and .rst7) using Xleap. And then I
> have converted this input file into Gromacs input file format (*.gro and
> *.top) with amb2gmx.pl script. I did simulation using Gromacs Package (Amber
> Force Field). Now I would like to convert Gromacs trajectory file to Amber
> trajectory file format. So that I can easily analyses this trajectory. I
> tried to convert Gromacs trajectory file to Amber trajectory file using VMD.
> This VMD converted trajectory is not working fine. Pls help me in this
> regards
>
> Eagerly waiting for your suggestion.
>
>
>
> Regards
>
> Raja
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>
--
=======================================
Lorenzo Gontrani
Research associate of EDXD group
University of Rome "La Sapienza"
GSM +39 338 7615798
Email l DOT gontrani AT caspur DOT it
Webpage: http://webcaminiti/gontrani.html
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Received on Thu Jun 16 2011 - 09:30:03 PDT
