Hi,
Nothing looks wrong in your syntax. Could you provide me with your
prmtop file and 1 frame of coordinates (pdb or amber restart) so that
I can reproduce the error and start to debug it? Thanks!
-Dan
On Fri, Jun 10, 2011 at 12:00 AM, Xiao Chen <chen.xiao.po.gmail.com> wrote:
> Hi all!!
>
>
> I am using Cpptraj as shown in the exmaple :
>
> input:
>
> parm prmtop
> reference inpcrd
> trajin mdcrd
> rmsd :10-260 reference perres range 10-15 perresout PerResRMSD.dat
>
> i have performed bugfix for ambertools 1.5 on LINUX and I am getting
> "segmentation fault" . It is displayed as follows:
>
> ACTIONS: Initializing 1 actions:
> 0: [rmsd :10-260 reference perres range 10-15 perresout residues.tmp ]
> RMSD: (:1-225), reference is reference index 0 (:1-225), with fitting.
> Geometric center will be used.
> No-fit RMSD will also be calculated for residues 10-15 using mask
> [:X].
> WARNING: Currently residues are set up based on the first
> trajectory read in!
> Per-residue output file is residues.tmp
>
> BEGIN TRAJECTORY PROCESSING:
> ----- [prod1_dry.mdcrd] (1-100, 1) -----
> .... Setting up 1 actions for hl_dry.prmtop ....
> RMSD: PerRes: Setting up for 6 residues.
> ...................................................
> Segmentation fault-----------------------------------]
>
> Could you please help??
>
> Thanks,
>
> Po
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Received on Fri Jun 10 2011 - 08:30:03 PDT
