Hi all!!
I am using Cpptraj as shown in the exmaple :
input:
parm prmtop
reference inpcrd
trajin mdcrd
rmsd :10-260 reference perres range 10-15 perresout PerResRMSD.dat
i have performed bugfix for ambertools 1.5 on LINUX and I am getting
"segmentation fault" . It is displayed as follows:
ACTIONS: Initializing 1 actions:
0: [rmsd :10-260 reference perres range 10-15 perresout residues.tmp ]
RMSD: (:1-225), reference is reference index 0 (:1-225), with fitting.
Geometric center will be used.
No-fit RMSD will also be calculated for residues 10-15 using mask
[:X].
WARNING: Currently residues are set up based on the first
trajectory read in!
Per-residue output file is residues.tmp
BEGIN TRAJECTORY PROCESSING:
----- [prod1_dry.mdcrd] (1-100, 1) -----
.... Setting up 1 actions for hl_dry.prmtop ....
RMSD: PerRes: Setting up for 6 residues.
...................................................
Segmentation fault-----------------------------------]
Could you please help??
Thanks,
Po
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Received on Thu Jun 09 2011 - 21:30:02 PDT
