Hi,
Please look at the AmberTools/test/leap again and also all the subfolders
inside. Examine all the files ended with either .log or .out. There should
be error reported inside one of those files. After that you can post here
about the error.
Thanks.
On Fri, Jun 10, 2011 at 7:47 PM, souvik sur <souviksur.hotmail.com> wrote:
>
> Hello sir,
> There is no file named as ff94_prm.out, I found ff94_prm.cmd, and inside of
> the file I found:
> [root.nis leap]# vi ff94_prm.cmdlogfile ff94_prm.log
> set default OldPrmtopFormat onsource oldff/leaprc.ff94
> logfile ff94_prm.log
> x = loadpdb ff94/all_aminoan.psaveamberparm x ./all_aminoan94.top
> ./all_aminoan94.crd
> ncres = { NALA CALA NPRO CPRO }x = loadpdbusingseq ff94/all_aminonc.p
> ncressaveamberparm x ./all_aminonc94.top ./all_aminonc94.crd
> x = loadpdb ff94/all_dna94.psaveamberparm x ./all_dna94.top
> ./all_dna94.crdstrand = { RC5 RG RU RA3 }x = loadpdbusingseq
> ff94/all_rna94.p strandsaveamberparm x ./all_rna94.top ./all_rna94.crd
> quit~~Type :quit<Enter> to exit Vim
>
> regards,
> Souvik Sur
> Ph. D. Student
> Department Of Chemistry
> University Of Delhi
> India
>
>
>
>
> > Date: Fri, 10 Jun 2011 06:08:45 -0400
> > From: case.biomaps.rutgers.edu
> > To: amber.ambermd.org
> > Subject: Re: [AMBER] Loadin AMBER9 in linux
> >
> > On Fri, Jun 10, 2011, souvik sur wrote:
> > >
> > > yes sir, i got the file location but from that directory i am not able
> > > to run test/ff94_prm.out, it showed :
> >
> > We don't want you to *run* that file; it is not an excecutable file. We
> want
> > to know the contents of the file. Maybe you have a friend who is more
> > familiar with computers who can help out(?)
> >
> > ....dac
> >
> >
> > _______________________________________________
> > AMBER mailing list
> > AMBER.ambermd.org
> > http://lists.ambermd.org/mailman/listinfo/amber
>
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
Regards,
THChew
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Fri Jun 10 2011 - 07:30:04 PDT
