Greetings,
I recently attempt to install Amber 9 on Ubuntu 11.04 64-bit. What I did:
sudo apt-get install csh libxt-dev libxext-dev bison flex xorg-dev
build-essential gfortran g++
set AMBERHOME=/path_to_amber/
export PATH=$PATH:$AMBERHOME/exe
cd $AMBERHOME
patch -p0 -N -r patch_rejects < bugfix.all
cd $AMBERHOME/src
make serial
cd $AMBERHOME/test
make test.serial
And this error comes out:
============================
'94 ff..
diffing ../../dat/leap/lib/all_amino94.lib with all_amino94.lib
PASSED
==============================================================
diffing ../../dat/leap/lib/all_aminoct94.lib with all_aminoct94.lib
PASSED
==============================================================
diffing ../../dat/leap/lib/all_aminont94.lib with all_aminont94.lib
PASSED
==============================================================
diffing ../../dat/leap/lib/all_nucleic94.lib with all_nucleic94.lib
PASSED
==============================================================
diffing ../../dat/leap/lib/ions94.lib with ions94.lib
PASSED
==============================================================
loadpdb and saveamberparm: 94 ff..
./Run.tleap: Program error in leap
make: *** [test.leap] Error 1
============================
I looked in test/ff94_prm.out and found this:
============================
-I: Adding /home/teonghan/Desktop/amber9/dat/leap/prep to search path.
-I: Adding /home/teonghan/Desktop/amber9/dat/leap/lib to search path.
-I: Adding /home/teonghan/Desktop/amber9/dat/leap/cmd to search path.
-I: Adding /home/teonghan/Desktop/amber9/dat/leap/parm to search path.
-s: Ignoring startup file: leaprc
-f: Source ff94_prm.cmd.
Welcome to LEaP!
Sourcing: ./ff94_prm.cmd
Log file: ./ff94_prm.log
----- Source: ../../dat/leap/cmd/leaprc.ff94
----- Source of ../../dat/leap/cmd/leaprc.ff94 done
Log file: ./leap.log
Loading parameters: /home/teonghan/Desktop/amber9/dat/leap/parm/parm94.dat
Reading title:
PARM94 for DNA, RNA and proteins with TIP3P Water. USE SCEE=1.2 in energy
progs
Loading library: ./all_nucleic94.lib
Segmentation fault
============================
Any idea what is the problem?
--
Regards,
THChew
_______________________________________________
AMBER mailing list
AMBER.ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber
Received on Mon Jun 06 2011 - 03:30:03 PDT
