[AMBER] another AmberTools problem

From: Michael Forrester <mf1.iastate.edu>
Date: Tue, 12 Apr 2011 15:36:31 -0400

I've installed the new gcc version and gfortran however I am getting a new
problem. I realize that I still need to install the XFreee86 but I'm just
trying to get the gfortran stuff working. I am fairly new to linux so I
would appreciate as many details as possible.

Could not find the X11 libraries; you may need to edit config.h
   to set the XHOME and XLIBS variables.
Warning: the X11 libraries are not in the usual location !
    To search for them try the command: locate libXt
    On new Fedora OS's install the libXt-devel libXext-devel
    libX11-devel libICE-devel libSM-devel packages.
    On old Fedora OS's install the xorg-x11-devel package.
    On RedHat OS's install the XFree86-devel package.
    On Ubuntu OS's install the xorg-dev package.
    For the moment Amber will be configured not to build XLEaP.

Obtaining the gnu suite version:
      gcc -v
The version is 4.4.4

Testing the gcc compiler:
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o testp testp.c
OK

Validating the C++ compiler version:
     g++ -v
The version is
./configure: line 993: [: too many arguments
OK

Testing the gfortran compiler:
     gfortran -O0 -o testp testp.f
/usr/local/gfortran/libexec/gcc/i686-pc-linux-gnu/4.7.0/f951: error while
loading shared libraries: libmpc.so.2: cannot open shared object file: No
such file or directory
./configure: line 1020: ./testp: No such file or directory
Unable to compile a Fortran program using gfortran -O0
We will be unable to compile sqm

Testing mixed C/Fortran compilation:
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -c -o testp.c.o testp.c
     gfortran -O0 -c -o testp.f.o testp.f
/usr/local/gfortran/libexec/gcc/i686-pc-linux-gnu/4.7.0/f951: error while
loading shared libraries: libmpc.so.2: cannot open shared object file: No
such file or directory
     gcc -o testp testp.c.o testp.f.o -lgfortran
gcc: testp.f.o: No such file or directory
./configure: line 1057: ./testp: No such file or directory
WARNING: Unable to compile mixed C/Fortran code.

Testing pointer size:
     gcc -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -o test_pointer_size
test_pointer_size.c
Detected 32 bit operating system.

Testing flex:
./configure: line 1117: flex: command not found
Unable to run flex; this is recommended for NAB
Please check your PATH, or install the program

We will try to solider on with precompiled files


Configuring NetCDF; (may be time-consuming)

    Error: NetCDF configure returned 1
    NetCDF configure failed! Check the netcdf_config.log file.
    Continuing but NetCDF will be skipped.

Configuring fftw-2.1.5; (may be time-consuming)

    Error: fftw configure returned 1
    fftw configure failed! Check the fftw2_config.log file.
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Received on Tue Apr 12 2011 - 13:00:02 PDT
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