[AMBER] Vector analysis

From: John S <s.john634.gmail.com>
Date: Wed, 6 Apr 2011 12:01:02 -0400

Dear Amber Users,

I need to get co-ordinates of two vectors lying at different orientation
with the residue .

I used as below :

vector vec_1 :100 principal x out principal_x
vector vec_2 :100 principal y out principal_y
vector vec_3 :100 principal z out principal_z


how are the x y and z axis defined here and is there anyway to specify a
vector connecting center of mass of two residues .

Thanks
John

Thanks
John
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Received on Wed Apr 06 2011 - 09:30:02 PDT
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