Hi,
Can you provide the following information so that it can help us diagnose
your problem. What did you specifically type on the command line to run this
calculation (inputs/outputs if any)? Have you applied all bug fixes? Do you
pass all the amber tests when you run *test_amber_parallel.sh?*
On Mon, Apr 4, 2011 at 7:11 PM, vani panguluri <vanipanguluri.gmail.com>wrote:
> Hello amber users,
>
> I am get the following error while executing mm_pbsa.pl.
>
> Exit code -5 signaled from qb504
> Killing remote processes... At-entry must be first
> For details see:
> http://ambermd.org/Questions/mm_pbsa.html#read_input_at_entry_first
> At-entry must be first For details see:
> http://ambermd.org/Questions/mm_pbsa.html#read_input_at_entry_first
> At-entry must be first For details see:
> http://ambermd.org/Questions/mm_pbsa.html#read_input_at_entry_first
> At-entry must be first For details see:
> http://ambermd.org/Questions/mm_pbsa.html#read_input_at_entry_first
> MPI process terminated unexpectedly
> DONE
> ------------------------------------------------------
> Running PBS epilogue script - 04-Apr-2011 18:06:06
> ------------------------------------------------------
> Checking node qb504 (MS)
> -> Killing process of vani: bash
> -> Killing process of vani:
> /home/packages/mvapich/1.1/intel-11.1/bin/mpispawn
> -> Killing process of vani: [mm_pbsa.pl]
> /usr/local/sbin/node_cleaner: line 86: kill: (3307) - No such process
> -> Killing process of vani: [mm_pbsa.pl]
> /usr/local/sbin/node_cleaner: line 86: kill: (3308) - No such process->
> Killing process of vani: [mm_pbsa.pl]
> /usr/local/sbin/node_cleaner: line 86: kill: (3309) - No such process
> -> Killing process of vani: [mm_pbsa.pl]/usr/local/sbin/node_cleaner: line
> 86: kill: (3310) - No such process
> -> Killing process of vani: [mm_pbsa.pl]
> /usr/local/sbin/node_cleaner: line 86: kill: (3311) - No such process->
> Killing process of vani: [mm_pbsa.pl]
> /usr/local/sbin/node_cleaner: line 86: kill: (3313) - No such process
> -> Killing process of vani: [mm_pbsa.pl]/usr/local/sbin/node_cleaner: line
> 86: kill: (3314) - No such process
> Checking node qb504 ok
>
>
> can anyone help me to solve this error.
>
> Regards,
> Vani
> _______________________________________________
> AMBER mailing list
> AMBER.ambermd.org
> http://lists.ambermd.org/mailman/listinfo/amber
>
--
T. Dwight McGee Jr.
Quantum Theory Project
University of Florida
Graduate Student
dwight.mcgee.gmail.com
"Problems cannot be solved at the same level of awareness that created
them."
Albert Einstein
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Received on Tue Apr 05 2011 - 09:00:03 PDT
