Hello,
After producing my .mol2 file with antechamber, I am using sleap to prepare
inputs for the ff02pol.r1 force field.
However, I receive an error after the following commands:
[gtkleap]$ source leaprc.ff02pol.r1
[gtkleap]$ mol = loadmol2 em_ac.mol2
[gtkleap]$ saveAmberParmPol mol prmtop inpcrd
Error: unknown atom type: c3
It is not clear why the atom type is unrecognized since C3 appears to be in
the leaprc.ff02pol.r1 file. Does anyone know why this error would occur?
The mol2 file is attached.
Thanks,
Rob
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Received on Mon Apr 04 2011 - 08:00:06 PDT
